During the late-1940s and early-1950s, West Abbotsford Mennonite Church experienced significant growth. By 1952 the sanctuary was filled to capacity on many Sunday mornings. The congregation decided to build a daughter church in Clearbrook. Abraham H. Loeppky donated a lot on the corner of Clearbrook and Peardonville roads. West Abbotsford agreed to help finance the new structure and to draw up a list of people from the church interested in starting a new church. Clearbrook Realty and Insurance Agency sold the lot to the church for $1.00, and the sanctuary, built with much volunteer labour, cost $12,000.

Clearbrook Mennonite Church was formally organized on December 8, 1952 with 60 members. Abram I. Loewen, a minister at West Abbotsford, was the first pastor of the church. By January 1954 the membership had grown to around 120, and by 1965, over 200 members. The church was reluctant to relinquish the German language, and, in 1960, 52 people left to form a new English speaking church, Olivet Mennonite Church. The church, however, soon recovered and by 1963 had 213 members.

By 1972 almost 70% of the congregation was over 60 and by 1978 almost 95% of the members were retired. The church continued to attract older members moving into the Clearbrook/Abbotsford area until the 1990s, when attendance began to decline. A strong emphasis on the German language remains. By 2011, the membership had declined to under 50 with a weekly attendance of between 36 and 42. After continuing decline, the church held its last service in 2015.